Browsing by Author "Natali, F"

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    New sources and instrumentation for neutrons in biology
    (Elsevier, 2008-04-18) Teixeira, SCM; Zaccai, G; Ankner, J; Bellissent-Funel, MC; Bewley, RI; Blakeley, MP; Callow, P; Coates, L; Dahint, R; Dalgliesh, R; Dencher, NA; Forsyth, VT; Fragneto, G; Frick, B; Gilles, R; Gutberlet, T; Haertlein, M; Hauß, T; Häußler, W; Heller, WT; Herwig, K; Holderer, O; Juranyi, F; Kampmann, R; Knott, RB; Krueger, S; Langan, P; Lechner, RE; Lynn, GW; Majkrzak, CF; May, RP; Meilleur, F; Mo, Y; Mortensen, K; Myles, DAA; Natali, F; Neylon, C; Niimura, N; Ollivier, J; Ostermann, A; Peters, J; Pieper, J; Rühm, A; Schwahn, D; Shibata, K; Soper, AK; Strässle, T; Suzuki, J; Tanaka, I; Tehei, M; Timmins, P; Torikai, N; Unruh, T; Urban, V; Vavrin, R; Weiss, K
    Neutron radiation offers significant advantages for the study of biological molecular structure and dynamics. A broad and significant effort towards instrumental and methodological development to facilitate biology experiments at neutron sources worldwide is reviewed. © 2008, Elsevier Ltd.
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    Strikingly different roles of SARS-CoV‑2 fusion peptides uncovered by neutron scattering
    (American Chemical Society (ACS), 2022-02-14) Santamaria, A; Batchu, KC; Matsarskaia, O; Prévost, SF; Russo, D; Natali, F; Seydel, T; Hoffmann, I; Laux, V; Haertlein, M; Darwish, TA; Russell, RA; Corucci, G; Fragneto, G; Maestro, A; Zaccai, NR
    Coronavirus disease-2019 (COVID-19), a potentially lethal respiratory illness caused by the coronavirus SARS-CoV-2, emerged in the end of 2019 and has since spread aggressively across the globe. A thorough understanding of the molecular mechanisms of cellular infection by coronaviruses is therefore of utmost importance. A critical stage in infection is the fusion between viral and host membranes. Here, we present a detailed investigation of the role of selected SARS-CoV-2 Spike fusion peptides, and the influence of calcium and cholesterol, in this fusion process. Structural information from specular neutron reflectometry and small angle neutron scattering, complemented by dynamics information from quasi-elastic and spin-echo neutron spectroscopy, revealed strikingly different functions encoded in the Spike fusion domain. Calcium drives the N-terminal of the Spike fusion domain to fully cross the host plasma membrane. Removing calcium, however, reorients the peptide back to the lipid leaflet closest to the virus, leading to significant changes in lipid fluidity and rigidity. In conjunction with other regions of the fusion domain, which are also positioned to bridge and dehydrate viral and host membranes, the molecular events leading to cell entry by SARS-CoV-2 are proposed. © 2022 The Authors. Published by American Chemical Society. This publication is licensed under CC-BY-NC-ND 4.0.
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    Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics
    (The Royal Society, 2012-11-07) Stadler, AM; Garvey, CJ; Bocahut, A; Sacquin-Mora, S; Digel, I; Schneider, GJ; Natali, F; Artmann, GM; Zaccai, G
    Thermodynamic stability, configurational motions and internal forces of haemoglobin (Hb) of three endotherms (platypus, Ornithorhynchus anatinus; domestic chicken, Gallus gallus domesticus and human, Homo sapiens) and an ectotherm (salt water crocodile, Crocodylus porosus) were investigated using circular dichroism, incoherent elastic neutron scattering and coarse-grained Brownian dynamics simulations. The experimental results from Hb solutions revealed a direct correlation between protein resilience, melting temperature and average body temperature of the different species on the 0.1 ns time scale. Molecular forces appeared to be adapted to permit conformational fluctuations with a root mean square displacement close to 1.2 Å at the corresponding average body temperature of the endotherms. Strong forces within crocodile Hb maintain the amplitudes of motion within a narrow limit over the entire temperature range in which the animal lives. In fully hydrated powder samples of human and chicken, Hb mean square displacements and effective force constants on the 1 ns time scale showed no differences over the whole temperature range from 10 to 300 K, in contrast to the solution case. A complementary result of the study, therefore, is that one hydration layer is not sufficient to activate all conformational fluctuations of Hb in the pico- to nanosecond time scale which might be relevant for biological function. Coarse-grained Brownian dynamics simulations permitted to explore residue-specific effects. They indicated that temperature sensing of human and chicken Hb occurs mainly at residues lining internal cavities in the β-subunits. Copyright © The Royal Society 2012.